Welcome to the epitopepredict documentation.

Contents:

• Introduction
• Installation
  • Prediction algorithms
  • Installing netMHCpan and netMHCIIpan
  • Installing IEDB MHC-I tools
• Submit Bugs
• References
• Command Line Interface
  • Usage
  • Configuration file settings
  • Settings explained
  • Cutoff methods
  • Binding promiscuity
  • Preset allele lists
  • IEDB tool methods
  • Examples
  • Outputs
• Web Application
  • Usage and Interface
  • Future features
• Code Examples
  • Methodology
  • Basics
  • Analysis
• MHC Allele Nomenclature
• File Formats
• epitopepredict
  • epitopepredict package

Indices and tables

• Index
• Module Index
• Search Page